NO03G02890, NO03G02890 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02890
Unique Name	NO03G02890
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2322
Alignment location	chr3:872402..874723 -

Link to JBrowse

Properties


Property Name	Value
Description	Ania-6a type cyclin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:872402..874723 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036915	Cyclin-like_sf

Homology

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_005855202.1 (ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526] >EKU21157.1 ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.4 bits (433), Expect = 5.600e-39
Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0

Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
            +FVFHH+ RRRR L PSLLEVTS RYHDLREALL   KYVLKELGFGF ++MDH H F+L Y K L G P LAQ+AWNYLNDSLRLDCCVR+RA L AC ALYMA+R+LG
Sbjct:  158 LFVFHHMCRRRRGLGPSLLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTLDGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLG 267

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: EWM29818.1 (ania-6a type cyclin [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 5.600e-39
Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0

Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
            +FVFHH+ RRRR L PSLLEVTS RYHDLREALL   KYVLKELGFGF ++MDH H F+L Y K L G P LAQ+AWNYLNDSLRLDCCVR+RA L AC ALYMA+R+LG
Sbjct:  158 LFVFHHMCRRRRGLGPSLLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTLDGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLG 267

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: CBJ28076.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.9 bits (250), Expect = 9.300e-18
Identity = 51/112 (45.54%), Postives = 76/112 (67.86%), Query Frame = 0

Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPE--LAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
            + VFH +  RR  + P+++ +       LR+ +L    +VLKELGFGF N+MDH H F+L Y ++L    E  ++Q+AWNY+NDSLR D  +R+R+ + ACAA+YMA+R+LG
Sbjct:  158 VLVFHRMFERRIGVDPAIV-IPPESLRVLRDEMLRVELHVLKELGFGFYNIMDHPHKFILYYLRVLELDIEGDVSQRAWNYVNDSLRTDLSLRFRSEVIACAAIYMASRSLG 268

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: GAY03478.1 (kinesin-like protein [Pythium insidiosum])

HSP 1 Score: 99.0 bits (245), Expect = 3.500e-17
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 0

Query:    3 VFHHIRRRRR----SLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNL 110
            VF+ I RRR+    +L   LL+V    Y   R+ L+   + +L +LGF   ++M+H H ++L Y KIL G   LAQ+AW YLNDSLR+D CVR+RA   ACAA+++A+R L
Sbjct: 1870 VFYAIYRRRKWGKTALSQQLLDVDGDSYFLWRDWLVIVERQLLIDLGFSLYDIMEHPHKYILYYIKILDGSKALAQQAWGYLNDSLRIDLCVRHRAEAIACAAIFLASRTL 1980

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_009039415.1 (hypothetical protein AURANDRAFT_12696, partial [Aureococcus anophagefferens] >EGB05871.1 hypothetical protein AURANDRAFT_12696, partial [Aureococcus anophagefferens])

HSP 1 Score: 98.6 bits (244), Expect = 4.600e-17
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 0

Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNL 110
            + VFH +  R R+   + LE+   RY+  +  L+   +++LKELGF F  ++DH H F+L Y K+L    ELAQ+AW+YLND LR D  +RYR+ + ACAA+YMAAR L
Sbjct:   94 LMVFHFV-YRVRTKSSATLELGGVRYNGWKHELVKVERHILKELGFSF-YIIDHSHKFILFYVKLLDCDGELAQEAWSYLNDCLRTDAALRYRSEVLACAAIYMAARRL 200

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: OWZ17776.1 (Cyclin-L1 [Phytophthora megakarya])

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-16
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 0

Query:    3 VFHHIRRRRR----SLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSKFNSWRLS 136
            VF+ + RRR+    ++   L++V  + +   R  L+   + VL +LGF   NV +H H +VL Y K+L G   LAQ+AW Y+NDSLR D CVRY+A + ACAA+++A+R  G         W  +FD  K   + +S
Sbjct:  103 VFYAMLRRRKWRRTTVTQQLVDVDGATFSQWRMWLIMVERQVLIDLGFSVYNVTEHPHKYVLYYVKVLDGSSTLAQQAWGYINDSLRTDLCVRYKAQVIACAAIFLASRFQGVALPE-NPPWYSLFDVEKTQLYAVS 238

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_010914382.1 (PREDICTED: cyclin-L1-1 [Elaeis guineensis] >XP_019704224.1 PREDICTED: cyclin-L1-1 [Elaeis guineensis])

HSP 1 Score: 96.7 bits (239), Expect = 1.800e-16
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 0

Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFD 126
            + VFH +  RR +LP   L+V+S +Y DL+  L+   +++LKE+GF  C+V +H H F+  Y   LG  PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            WL VFD
Sbjct:  102 LIVFHRMECRRENLPIEHLDVSSKKYADLKNDLIKTERHLLKEMGF-ICHV-EHPHKFISNYLATLGAPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENPPWWL-VFD 223

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_008619859.1 (hypothetical protein SDRG_15464 [Saprolegnia diclina VS20] >EQC26735.1 hypothetical protein SDRG_15464 [Saprolegnia diclina VS20])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 0

Query:    3 VFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
            VF  +R RR  L P LL  +  R+    + ++   + +L E+GF    + +H H F+L Y KIL G   LAQKAWNY+NDS RLD C+R+ A + ACAA+ +AAR LG
Sbjct:   88 VFFRMRNRRMGLQPILLMPSDPRFSQWSDYIIMVERQLLIEVGFSIDAMTEHPHKFLLYYVKILDGSNALAQKAWNYVNDSFRLDLCLRFDAHVIACAAISLAARVLG 195

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_012210805.1 (hypothetical protein SPRG_15314 [Saprolegnia parasitica CBS 223.65] >KDO18486.1 hypothetical protein SPRG_15314 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 0

Query:    3 VFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
            VF  +R RR  L P LL  +  R+    + ++   + +L E+GF    + +H H F+L Y KIL G   LAQKAWNY+NDS RLD C+R+ A + ACAA+ +AAR LG
Sbjct:   88 VFFRMRNRRMGLQPILLMPSDPRFSQWSDYIIMVERQLLIEVGFSIDAMTEHPHKFLLYYVKILDGSNALAQKAWNYVNDSFRLDLCLRFDAHVIACAAISLAARVLG 195

[Close]

BLAST of NO03G02890 vs. NCBI_GenBank
Match: POE71738.1 (cyclin-l1-1 [Quercus suber])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 0

Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSK 129
            + VFH +  RR +LP   LEV S +YHDL+  L    +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            W  VFD  K
Sbjct:  102 LVVFHRMECRRENLPIEHLEVGSQKYHDLKTDLSRTERHILKEMGF-VCHV-EHPHKFISNYLATLETPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPE-NPPWWKVFDADK 226

The following BLAST results are available for this feature:

BLAST of NO03G02890 vs. NCBI_GenBank

BLAST of NO03G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005855202.1	5.600e-39	74.55	ania-6a type cyclin, partial [Nannochloropsis gadi...	[more]
EWM29818.1	5.600e-39	74.55	ania-6a type cyclin [Nannochloropsis gaditana]	[more]
CBJ28076.1	9.300e-18	45.54	conserved unknown protein [Ectocarpus siliculosus]	[more]
GAY03478.1	3.500e-17	45.95	kinesin-like protein [Pythium insidiosum]	[more]
XP_009039415.1	4.600e-17	46.79	hypothetical protein AURANDRAFT_12696, partial [Au...	[more]
OWZ17776.1	1.000e-16	38.69	Cyclin-L1 [Phytophthora megakarya]	[more]
XP_010914382.1	1.800e-16	42.40	PREDICTED: cyclin-L1-1 [Elaeis guineensis] >XP_019...	[more]
XP_008619859.1	2.300e-16	45.37	hypothetical protein SDRG_15464 [Saprolegnia dicli...	[more]
XP_012210805.1	2.300e-16	45.37	hypothetical protein SPRG_15314 [Saprolegnia paras...	[more]
POE71738.1	2.300e-16	42.19	cyclin-l1-1 [Quercus suber]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL068	nonsL068	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR052	ngnoR052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G02890.1	NO03G02890.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|8609	gene_1482	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G02890.1	NO03G02890.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G02890 ID=NO03G02890|Name=NO03G02890|organism=Nannochloropsis oceanica|type=gene|length=2322bp
ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC
CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC
TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT
GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG
GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT
TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT
GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA
GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC
TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG
CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG
AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG
CACGTAATATGGGCCACAGGGCACgtaccttgtattgaaagaatgccaaa
attaaagtactggcaatcatcaactactaggatatcatttgtgcgtgaca
gcgacgatgtaggtggacgccatattatatcttgcctttcaggccgcaca
ttttcacgaacccgaggggaaaatgggaaagctagactaattgttttgaa
tctttcggggattctagcgtgcgcgtgcgtgcggttctttttccatgggt
tgtatttgcgccctcgacaaagcaggcgctacccgctggaaagtcccgtt
gtcttaaaggtcaacaaataatgtataaggacttggatgtaagtcaagca
gaaacaaagcatggtgtggaatctggccagcacatcacgttagatactgt
gagcacatcccgccccaaatccgaacaattcgctgagttcccctcacgga
aagtgaagacgttgacttcttctccctacttaaaaaaaatatattgatga
gctttttggacagtccgggacgaggcatgcgtacaagggtgttggctaca
tgctactccagGTTATTTGTTGTATATTGAGCAACAGCTGCCACTATCAG
CACAGTGGTTTACAAGgtgcagtagaataccttccctcctcccaagagcc
gagacgagcgtgcatggcaccgcctccgctgcaaagcatttggctcgctg
ctttttttactgccgccgccaccatatccaccaccgacaccaacccaccg
ccacatcccccacacccacactcccacagGTGGCCCCCTACGCCAGCCTG
GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG
ACAAGCgtgcgtggcgccgcctcccttgcacagcatttccttcctgcgcc
acaccggcctcctaccatcgtttccctgtccagctccgcgcgacaaccta
cttttccccttgtgccgcggaccacactgtgcgcttcataagaacagtca
ttggaccagagggggcaccttgcttgccctttacacatctgttcaccacc
aggatgaatcatgggcgcccacttttcgtagccccatcctacccactttt
atcttagcacgccttcctaggggcgacgaacttctatgcggacatcgtct
ttgtttgtatgccttggtctgtggagtcgtgatcctttgagtaggactat
caaccctcataaccagattttcgcggttctatgtgtccctccctttattt
tccgtccaaaaacacagaattgccctctgttaaagtcaagCGACCGGATT
GAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGCAGCAGCAGCAGCAGAA
GCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAAGGGGAAGAAAGAAAAT
GGACCACGGCAGCAGAAGCAGCAAAGGCAGCACCAGCACGAGCACGAGCA
GAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAGGAGAGGAGGGGGAGAA
AGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGCGAGCAGTACTAGCACG
AGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGAGCAGGAGCTGGAGGGG
AAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGGGAAGAGCGGATGAGAG
GTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGCAGGAGGAGAAGGAGAA
AGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGATTTCACATGCCATCCA
TCCGAGAAATCTGTCGGTGTGA

protein sequence of NO03G02890.1

>NO03G02890.1-protein ID=NO03G02890.1-protein|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCN
VMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACA
ALYMAARNLGTTFATWKCNWLPVFDDSKFNSWRLSRPETRQEKAYMPLPL
RGICFRPLLPSNRQKRGENMEGGCSRKGTMGHWARNMGHRARYLLYIEQQ
LPLSAQWFTRWPPTPAWKRTITQWQHQSDSGRRDKPTGLREGLCGSKSSS
SSSSRSSRVGEEKEGEKGKKENGPRQQKQQRQHQHEHEQKQQEKEGEEGK
ERRGRKKKCWRGSKRSASSTSTSSSRMGRGRERSRSWRGSVGAGAGVGGR
EERMRGRGWVGGEAAVAGGEGEREGGGKRSGNGISHAIHPRNLSV*

Synonyms

Publications