NO04G00350, NO04G00350 (gene) Nannochloropsis oceanica

Overview
NameNO04G00350
Unique NameNO04G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2945
Alignment locationchr4:145822..148766 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:145822..148766 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00350.1NO04G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636918gene_1816Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00350.1NO04G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00350 ID=NO04G00350|Name=NO04G00350|organism=Nannochloropsis oceanica|type=gene|length=2945bp
TGACTACATAATTCCTCGATATTGATTGCTTGTTGTTGCTTGTTTATTTG
CTTATTTGGTTGTTTTTTCGCATGTATATTCTCTTATTGCGGCTATGCAA
CACGTCCTTTGTCTGCAGGCCCTGCTGGCAGCATGGCATTCAACGCTCTG
AAATGCGTAAGGGAACCCATGCAACGCTTGTTGCTCTTGGCCGCATCGCT
GCATCCGCGACTCTCCTTTCCGCTTGTCTATGTGTGTTGGTGGCAAGAAT
GCGTCACTCCTCTCCTCATGTTTCATGTGGTCTAAGCCTATAGGCTAAAA
CTTATAATGATGCGGTGTATGCGTGTGTGCGCACTACACTGAGCAATTAC
CCAGACATTATGTACGTACGCAAGGTTGTTTCGTATCGTGGCTCCTTTTG
TAGAGCTTGGCGTGTGGTAGTGGTACTAATGGAGGCCATTGGCATCTCAA
AGGTTTTTCCCCCTTCGATGGTTGCATGGTGCGGGAGGCAAGGAGAAGAG
CAGAGCAGCCAAATAACAGGCTGCCCTCGACTATTCATCATTACAAGCAG
CAGCAACCTATTCTATGTATACAAAAACCACCACACCCACACTCACGCCC
GACTATGCCTTAGCCAGCTCTGCAATGTGCTGTCTCGCTCCCTGGGACAT
CTTCTCTGAGCCGCGGCGCACAGATTGGCACGACCTCCTAAAAACGCCTC
AAGCGCATATAGATGGGGTCCGTGTCCATCACCAGCGAAAACACACTGCC
CCGCAGTCTAGCATACTAAATATTTATGTAGGAACATGCTGAAAATCACC
CCTAAAATGTATTCACTGTTTTCTATCCACCATTCCCCATACTTTTCCAC
AGCCTTCTTCTGACTTTGCAGCCAAGCTACCATGTTTATACAGTCTGCCC
TCCTCTTTGTGGCCTTCCTCTGCGTGGCAGgcaagtgcgtggaagataat
attttgagggacttgtgcccttatatatctcattgtcttgtttctttttg
aggacaatctcttggccctccagcaggcctatatgcatacggcactgtac
tgtgcacgcctcacacccccaagggcagagcactttcgaattataacaat
atttctcaacctcactttggttccttctattcctcctcccattcccctcc
tcctttccttcgcctccttctctccttcgcctgctctcccctttctcctc
ttccctcttcccctcctctcccttcccccatctctcccacctctctcatt
ctcttccactccttccctcctcactatgcattcaccacgacagATGCCCA
GTTCGAGGCGCTGACGGTAAAGAACAAGACCAAGACGGGCAACAAGCTAC
CGAAAGGTGCCCACAACGACAAGACCAATCTACGCAAGGTAGATGGTTTC
AATCTCTGCACCCAGTCCTATGAGGCCTACATCAGCGGGACAGGTATCGC
CGGTACAGGCGCATTTTCGTACCCCGTCTACCCCGGGGACTGCAACGAGg
tatgcatgaatgaccagagcacattttttagggattcgtaaaaggtctgt
ggcccccactcctcactcgagtacataccgtccatctcacatttattact
ggacatttcacaaccaacagGTGGACTCCTCGACCGAGCAAATCGGTACC
TTGAGCGCCACGTGCTCTGGCAACCCCTATGAGGGCACAACCTTCACTGC
TACTGCCCTAGCAACCACCGAGAACTTCGTCAATCCTTTGCAAACTCTTA
GCTGCAGCAACACAAGCGGCTGCCCTTCCTCCAATCCCGATATCTTTCCT
CAATTCCTGGGAAGCTTGGTGAATAATTCCGTCATTCCCGACAACACCAC
TGCCGAAGAGGTGCAGACGTTTACGGATCAAATTTGTGCTGACATATTCG
GTGTAGTCCCGGCGCTTTCTAAAATTTCCCAGTGCTCTGCCGAGCTCCGC
CTCAGCGGCGACAACCGCAAGAACAAGCATCCGGGGAGCGGCTTGTCGTT
TGACTACACGACCAACACCACTTTAGTTCCCGgtacgtcgttatgacgat
gtatatggatgaatgcatgttgggagagaggtacaggcccgatgcaatat
tattaatgactggaaagttcgcttttagcaaattgtcaatccctaaccct
aactttactttcctctccttttattccatcacactttccctgcagCTGGC
AGCACTTACACCACCATCACTCAATATGGACTTGGCGCAAACTTCGGGTA
TCAGAACCCAATTTTTTATGTTGTTTTTATCGAATTGTACGCTTACCAGG
TGATCGACAGTATCACGTGCGTTGCCCGGCCTAATACAATTGACGAGACG
TTCGGCAAGATCTACTTTGGAGCCGGCCGCTTCGCGAAGTACGCCGCATC
CAAGGTGGCCTCGGTGGAGCTGGACACGGTTTTAGTTAACGTTCTCAACG
ACGCATCAAACCCTGTCAACATGTTCGAGCTTACTCCTCAGGAATGGACG
ACCCAGCTGGAGGTGAACTACGTAAAGCCCTACCTGCACTCCAGCATGCT
TTAAGGAAGGGCCATGGCATGACAGCTGTGCAAAGAGAATACGCGTGCAT
TTCTTCCAGATGTCCGACACTTCCTGCACTCCTTTTTTCCGTTACGCCAG
CAAGCATCCTCGTCAGTGAGGATCTGAAGACGTGTTGAGGATATGTCTGT
GTCTGTGCTCTGTGTGCTGTGTGCCTTGTAAGTCGTGTTAAAAGGCTGCG
TCCTGCTTATTGCTTGCGTGGCAGATGGGGCTCACCATTATATGTGAAGG
GCTGCTGCCCCTAGTTGCGAATTCCGGAGGTGCTTGTGTACCTGCACTAT
GTGTTTCGTGTCTTGTGGGAGTTAGGTCTTGCCTGTGATCCAGGGCGCTT
GAATAAAAGAGAACAACTGCACGGATCGTAAAAGAAAAACTTGTC
back to top

protein sequence of NO04G00350.1

>NO04G00350.1-protein ID=NO04G00350.1-protein|Name=NO04G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MFIQSALLFVAFLCVADAQFEALTVKNKTKTGNKLPKGAHNDKTNLRKVD
GFNLCTQSYEAYISGTGIAGTGAFSYPVYPGDCNEVDSSTEQIGTLSATC
SGNPYEGTTFTATALATTENFVNPLQTLSCSNTSGCPSSNPDIFPQFLGS
LVNNSVIPDNTTAEEVQTFTDQICADIFGVVPALSKISQCSAELRLSGDN
RKNKHPGSGLSFDYTTNTTLVPAGSTYTTITQYGLGANFGYQNPIFYVVF
IELYAYQVIDSITCVARPNTIDETFGKIYFGAGRFAKYAASKVASVELDT
VLVNVLNDASNPVNMFELTPQEWTTQLEVNYVKPYLHSSML*
back to top
Synonyms
Publications