NO04G01240, NO04G01240 (gene) Nannochloropsis oceanica

Overview
NameNO04G01240
Unique NameNO04G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr4:388320..389914 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:388320..389914 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO04G01240 vs. NCBI_GenBank
Match: PNH01468.1 (hypothetical protein TSOC_012642, partial [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-14
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 0
Query:  136 RIVAIDPGRVNLVTALD--SQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFF----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHLTTKVH 306
            RIV IDPGR N++ A++  S   K+  LT   YY++  +   K++  SW   + D  A  S  + K    DL  A+   +  H       W+   + + A+  + +Y GK++VL  FF     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:  663 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 838          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: PNH08370.1 (hypothetical protein TSOC_005131 [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-14
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 0
Query:  136 RIVAIDPGRVNLVTALD--SQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFF----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHLTTKVH 306
            RIV IDPGR N++ A++  S   K+  LT   YY++  +   K++  SW   + D  A  S  + K    DL  A+   +  H       W+   + + A+  + +Y GK++VL  FF     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:  377 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 552          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: PNH08357.1 (hypothetical protein TSOC_005129 [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-14
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 0
Query:  136 RIVAIDPGRVNLVTALD--SQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFF----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHLTTKVH 306
            RIV IDPGR N++ A++  S   K+  LT   YY++  +   K++  SW   + D  A  S  + K    DL  A+   +  H       W+   + + A+  + +Y GK++VL  FF     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:  324 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 499          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: PNH08379.1 (hypothetical protein TSOC_005114 [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-14
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 0
Query:  136 RIVAIDPGRVNLVTALD--SQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFF----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHLTTKVH 306
            RIV IDPGR N++ A++  S   K+  LT   YY++  +   K++  SW   + D  A  S  + K    DL  A+   +  H       W+   + + A+  + +Y GK++VL  FF     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:   93 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 268          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: PNH00238.1 (hypothetical protein TSOC_013956 [Tetrabaena socialis])

HSP 1 Score: 84.7 bits (208), Expect = 7.600e-13
Identity = 69/255 (27.06%), Postives = 103/255 (40.39%), Query Frame = 0
Query:   78 FHNRVSTDGVSVSVFFHVAKERLKRXXXXXXXXXXXXXXXXXXXXXQGQENLQPVRERRIVAIDPGRVNLVTALD---SQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFFA----GLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHLTTKVHLDCGQRLNPIARRTEGEGGE 326
            F   + TDGVSV +  H  + + K                         E L      R+V IDPGR N+V A++       KI  LT   YY++  + +  ++   W   + +  A  S  + K     L  A+    +      W    + + A+  + +Y GK++V+  FF+    G  G      +I YGA  F   GKGE+SVP   V + C   + T  V E  TTK+H      L  +  R    GGE
Sbjct:  299 FTGTIETDGVSVCI--HYMRPKRKEAEEEADDGGNEEAPKAKSKQRPTPEQLS---GSRVVVIDPGRTNIVYAVEVPPEAPPKIYRLTRSQYYQESGVVQGSQRAARWLRGVKEELAQLSTASPKGASLPLFQAFIATYLETCEVRWTEALKTRWAQQSLRLYGGKKRVVAKFFSEIARGDAGAPARPVVIGYGAAKFAPGGKGELSVPTSGVFKACRERFPTYLVDEFRTTKIHHADDSLLQGVGER-RWRGGE 547          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: PNH02916.1 (hypothetical protein TSOC_011071 [Tetrabaena socialis])

HSP 1 Score: 84.3 bits (207), Expect = 9.900e-13
Identity = 87/307 (28.34%), Postives = 123/307 (40.07%), Query Frame = 0
Query:  129 LQPVRER----RIVAIDPGRVNLVTALDSQTG--KIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHYH---RLWDARCEKKRARAHMAVYAGKQKVLDVFFAGLT--GPG-QAKP-IIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHLTTKV-HLDCGQRLNPIARRTEGEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIRGLYWC----NTCEQFVSRDGNGARNILRVYRRMVRGEARP 418
            L+P  E+    RIV IDPGR N++ A++      KI  LT   YY++  +   K++  +W     +     S  + K    DL+ A+   +  H       W+   + + A+ H+ +Y GK++VL  FF  +    PG  A+P II YGA  F   GKGE+SVP   V + C   + T  V E  +TKV H D         RR +G+                                                         +RGL WC     T  +FV+RD NGA NI    RR    E RP
Sbjct:  356 LRPTPEQLSRCRIVVIDPGRTNIIYAVEVTPDGVKIYRLTRAQYYQESGVERGKQQAANWLRGTKEELTKLSAASPKGA--DLQ-AFLVFVTTHLETSDARWEEALKPRWAQMHLRLYGGKKRVLAKFFDEIARGDPGAPARPVIIGYGAAKFAPGGKGELSVPTCGVFKACRARFPTHLVDEFRSTKVYHADDSILQGVAERRWKGD-----------------------------------------------------RMKTVRGLLWCGSTNETKSKFVNRDFNGAMNI----RRCFLSEERP 602          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: KXZ41250.1 (hypothetical protein GPECTOR_607g688 [Gonium pectorale])

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-11
Identity = 57/197 (28.93%), Postives = 94/197 (47.72%), Query Frame = 0
Query:  136 RIVAIDPGRVNL---VTALDSQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFFAGLTGPGQAK-----PIIAYGAGIFPHTGKGEVSVPVKRVLRV-CERYYRTVY-VPEHLTTKVHLDCGQRLNPIARRTEGE 323
            R++A++ GR N+   V  LD    ++  LT   YY +  I    R+   W   +     A S  + K    +    +  + +    +LW    + + A+  + ++ GK++ L +F  GL   G+A+      +IAYGA  F   GKGE+SVP  R+ R    R+ R VY V E  TT+VH +    L  + +R +G+
Sbjct:  268 RVLAVNLGRTNIAYVVELLDDGRLRVYRLTRAGYYRESGILGAARRAQHWLKGVRRATQALSLVSSKGAGLEAFLVFVRVHLETSGQLWAEMLKHRWAQERLRLHGGKKRALALFLEGLVWAGEARGDRRPVLIAYGAAGFASGGKGELSVPTTRMYRAFTHRFLRLVYLVDEFRTTRVHHEDDSVLESVHKRKKGK 464          
BLAST of NO04G01240 vs. NCBI_GenBank
Match: AAL56217.1 (unknown [White spot syndrome virus])

HSP 1 Score: 73.2 bits (178), Expect = 2.300e-9
Identity = 92/294 (31.29%), Postives = 138/294 (46.94%), Query Frame = 0
Query:   60 KEMWDETFQVGNLRNQRV---FHNRVSTDGVSVSVFFHVAKERLKRXXXXXXXXXXXXXXXXXXXXXQGQENLQPVRERRIVAIDPGRVNLV--TALDSQTGKI---KTLTCRAYYEKG------RINECKRK--------------FNSWEDALGDINAAFSRTTMKSCCPDLRSAYRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFFAGLTGPGQAK---PIIAYGAGIFPHTGKGEVSVPVKRVL--RVCERY---YRTVYVPEHLTTKVHLDCGQRLNPIAR 318
            K+ W   F V  ++  R    FH+ + TDG  VSV F        R   XXXXXXXXXXXXXXXX  + + N  P   + +V +DPGR N+V  +  D++  ++     +T + YY++       + NE  +K              +++ E+ + D N   S  T K        AY +++  HY  LW+ + +KK  +  M VY+ KQK +  F   L  P + K     IA+G   F  TG+GE      R+   ++ ER     R  +V E  T+KV   C Q LN + +
Sbjct:  177 KQGWYLLFDVKKIKKLRPNWNFHS-IQTDGEGVSVLF-------SREVEXXXXXXXXXXXXXXXXGDEDRRNYPPTNAKYVVGVDPGRTNVVSCSVFDTRQKRVVRKHRMTAKQYYQESWMTDRRKANETYKKNNKEYKEALEEITRYDNGEEIINDGNGDTSTPTKKF------EAYLKVVNEHYRLLWNEKGKKKYRKNAMKVYSRKQKCISNFIDELI-PKRDKIEDYHIAFGDAKFACTGRGEQYASPARIFAKKIKERVGGDKRFTFVDEKYTSKVCHRCNQPLNMLEK 455          
The following BLAST results are available for this feature:
BLAST of NO04G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
PNH01468.14.000e-1433.52hypothetical protein TSOC_012642, partial [Tetraba... [more]
PNH08370.14.000e-1433.52hypothetical protein TSOC_005131 [Tetrabaena socia... [more]
PNH08357.14.000e-1433.52hypothetical protein TSOC_005129 [Tetrabaena socia... [more]
PNH08379.14.000e-1433.52hypothetical protein TSOC_005114 [Tetrabaena socia... [more]
PNH00238.17.600e-1327.06hypothetical protein TSOC_013956 [Tetrabaena socia... [more]
PNH02916.19.900e-1328.34hypothetical protein TSOC_011071 [Tetrabaena socia... [more]
KXZ41250.11.400e-1128.93hypothetical protein GPECTOR_607g688 [Gonium pecto... [more]
AAL56217.12.300e-931.29unknown [White spot syndrome virus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01240.1NO04G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01240.1NO04G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01240 ID=NO04G01240|Name=NO04G01240|organism=Nannochloropsis oceanica|type=gene|length=1595bp
AAGCGATCGCCTTCGAACACAACCGAGTCACGTGGTGTCAATGCTGCCAT
ATTATGAAATAGTGCACCCGTCGCACGCACGTAAATTTGATTGGTTTAAA
GTCATAGCATGCGTTCCACAAAAGCGTACTGAAGCCCACAAAGTACCCAA
AGCAAGCCAGAAGAGATGTAATTTTCCTATTCATTCTTTAAAGTTTTGCC
AGGATGCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTTTCAGGTGGGG
AACCTACGAAACCAGCGGGTGTTTCATAATCGGGTTTCCACGGATGGTGT
CTCGGTGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTGAAGAGGGAGA
AAGCGGAGAGGGTCAGAGTGGAAAAGGAGGACGAGGAGAAGGAGATGCTG
GAACGTCAGCAGGGACAAGAAAACCTGCAGCCAGTCAGAGAGCGACGCAT
TGTCGCGATCGATCCCGGTCGCGTCAACCTGGTCACGGCGTTGGACTCGC
AGACGGGCAAGATCAAGACCTTGACGTGTCGTGCGTACTACGAAAAGGGG
CGGATCAACGAGTGCAAGAGAAAGTTTAACTCTTGGGAGGACGCACTCGG
TGACATCAATGCCGCCTTTTCGAGGACCACGATGAAGTCCTGCTGTCCCG
ACTTGCGTAGCGCTTACAGGGAGCTGATCGTACGGCATTACCACCGATTG
TGGGATGCCAGGTGTGAAAAGAAACGGGCGCGTGCGCATATGGCGGTGTA
TGCGGGGAAGCAGAAGGTCTTGGATGTTTTTTTTGCGGGCTTGACGGGGC
CAGGGCAGGCGAAGCCCATTATCGCGTATGGGGCGGGGATTTTCCCGCAC
ACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTGCTCCGGGTGTG
CGAAAGGTACTACAGAACAGTGTATGTACCCGAGCACCTGACGACAAAGG
TTCACCTCGATTGTGGGCAGCGCCTGAACCCTATTGCGAGAAGGACAGAA
GGAGAAGGAGGAGAAGGAGGAGGTGGTGGAGAAGGAGGTGGAGGAGGAGG
AGGAGGGGAAGGAGGAGGAGGAGGAGAAGGAGGAGGGGGAGGAGGCGGAG
GAGGCGGAGGAGGCGGAGGAGGCGGAGAAGGCGGAGGAGGACGAGGACCA
GGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTAA
CACCTGTGAACAGTTCGTGTCCCGGGACGGCAATGGGGCACGTAATATCC
TACGGGTGTACAGGAGAATGGTCCGTGGGGAAGCTCGTCCCCATGATCTT
CGGTTTGGTCAACCGCGGCAGGACATGCGGACACTCTATGTGTAGCCTTC
CCGCTGACCTCCTCTTTTATGCTCCTCCCCCTTCTCCTCCTGGCCCTGTG
TGGGCCGTCCGGGGACTTTGCCAGGTCAAAAAACCTGTCAAAGTCGCTAG
AAAAACTCGGACAAGGAAATAAGGGATGACAACACTTTCTTGTTGGAAGG
CTCCCCCTCGTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTT
CTAGAGAGATGTAGGAACTCAAAAGAACTATTCATTCAAGAGATA
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protein sequence of NO04G01240.1

>NO04G01240.1-protein ID=NO04G01240.1-protein|Name=NO04G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MLPYYEIVHPSHARKFDWFKVIACVPQKRTEAHKVPKASQKRCNFPIHSL
KFCQDAVSVKEMWDETFQVGNLRNQRVFHNRVSTDGVSVSVFFHVAKERL
KREKAERVRVEKEDEEKEMLERQQGQENLQPVRERRIVAIDPGRVNLVTA
LDSQTGKIKTLTCRAYYEKGRINECKRKFNSWEDALGDINAAFSRTTMKS
CCPDLRSAYRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFFAG
LTGPGQAKPIIAYGAGIFPHTGKGEVSVPVKRVLRVCERYYRTVYVPEHL
TTKVHLDCGQRLNPIARRTEGEGGEGGGGGEGGGGGGGGEGGGGGEGGGG
GGGGGGGGGGGGEGGGGRGPGRGGGHGRAIRGLYWCNTCEQFVSRDGNGA
RNILRVYRRMVRGEARPHDLRFGQPRQDMRTLYV*
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Synonyms
Publications