NO05G00410, NO05G00410 (gene) Nannochloropsis oceanica

Overview
NameNO05G00410
Unique NameNO05G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2672
Alignment locationchr5:155383..158054 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:155383..158054 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO05G00410 vs. NCBI_GenBank
Match: EWM28344.1 (hypothetical protein Naga_100846g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 334.7 bits (857), Expect = 8.200e-88
Identity = 151/186 (81.18%), Postives = 164/186 (88.17%), Query Frame = 0 
Query:  640 WWKMKYLELVEGTSFDPMEEGKRRSIFGYYQREAEEVQDLPFLPGGDPGEEVELPVFSRAQFVNTTWTIGIVGGGEGGWNPFKKVRRTRVFFREDGRVIWVNGGNIGEWSYDAKSNVFRFGRETFLSWNGRRSFPTLLTEDRSLYYMQGFVIGWAPFKPLSVYGLWQMYRDDVSAEERGTAPWEEE 826
            WW+ KYL+LVEGTSFDP E GKRRSIFGYYQRE EE  DLPFLP GDP E+ ELPVF R QFVNTTWT+G V     GWNP K+V+RTRVFFREDGRVIWVNGGN GEW++DA+SNVFRFGRE+FLSWNGRRS+PTLLTE+RSLYYMQGFVIGWAPF PLSV+GLWQMYRDDVS EERG APWEEE
Sbjct:   10 WWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTV---SDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEE 192
[Close]
BLAST of NO05G00410 vs. NCBI_GenBank
Match: XP_005855471.1 (hypothetical protein NGA_2031300, partial [Nannochloropsis gaditana CCMP526] >EKU20889.1 hypothetical protein NGA_2031300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 324.3 bits (830), Expect = 1.100e-84
Identity = 148/181 (81.77%), Postives = 160/181 (88.40%), Query Frame = 0 
Query:  645 YLELVEGTSFDPMEEGKRRSIFGYYQREAEEVQDLPFLPGGDPGEEVELPVFSRAQFVNTTWTIGIVGGGEGGWNPFKKVRRTRVFFREDGRVIWVNGGNIGEWSYDAKSNVFRFGRETFLSWNGRRSFPTLLTEDRSLYYMQGFVIGWAPFKPLSVYGLWQMYRDDVSAEERGTAPWEEE 826
            YL+LVEGTSFDP E GKRRSIFGYYQRE EE  DLPFLP GDP E+ ELPVF R QFVNTTWT+G V     GWNP K+V+RTRVFFREDGRVIWVNGGN GEW++DA+SNVFRFGRE+FLSWNGRRS+PTLLTE+RSLYYMQGFVIGWAPF PLSV+GLWQMYRDDVS EERG APWEEE
Sbjct:    1 YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTV---SDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEE 178
[Close]
BLAST of NO05G00410 vs. NCBI_GenBank
Match: XP_009037082.1 (hypothetical protein AURANDRAFT_71645 [Aureococcus anophagefferens] >EGB08362.1 hypothetical protein AURANDRAFT_71645 [Aureococcus anophagefferens])

HSP 1 Score: 79.7 bits (195), Expect = 4.700e-11
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 0 
Query:  696 FSRAQFVNTTWTIGIVGGGEGGWNPFKKVRRTRVFFREDGRVIWVNGGNIGEWSYDAKSNVFRFGRETFLSWNGRRSFPTLLTEDRSLYYMQGFVIGWAPFKPLSVYGLWQMYRDDVSAEERGTAPWEEEDEG 829
            +  A FV + W IG++      W   +K+  T V  +EDG   W   G  G+W  +   +   F R+  L WNG+R F   +  D +  +++G V GW PF+  ++ G WQ  R  +  E RG APW E++EG
Sbjct: 1479 YREADFVGSEWKIGVL------WRDKEKIDVTWVRCKEDGNSEW-GWGASGKWRLE-DGSFLTFTRDFPLGWNGKRLFSARVGADGN--FVEGVVRGWKPFESATIMGQWQAIR--LGVEGRGAAPWFEDEEG 1599
The following BLAST results are available for this feature:
BLAST of NO05G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28344.18.200e-8881.18hypothetical protein Naga_100846g1, partial [Nanno... [more]
XP_005855471.11.100e-8481.77hypothetical protein NGA_2031300, partial [Nannoch... [more]
XP_009037082.14.700e-1133.83hypothetical protein AURANDRAFT_71645 [Aureococcus... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003846NSK003846Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00410.1NO05G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629136gene_2833Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100846g1gene2232Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00410.1NO05G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00410 ID=NO05G00410|Name=NO05G00410|organism=Nannochloropsis oceanica|type=gene|length=2672bp
ATGGCCAGGAGACGGACACGGACGAAGCAAATGACCACCAAGGCCACGGC
AGGAGGCATACTATTGGCGTGTTGCTCTGgtaatttctgtggagagattg
tagaatggagagagacctcagtgttgcgtgctacgtgcatgcatcatcac
cccttcaacattacgcctctcccctcacctaccctccctacctctctccc
ttcctcacctaattatcagTTAGCGCTTTCTTCTGGGGCAGAAACCCCCC
TTCATCGTCCTTGTCCTCACGGCAGGCTTGGCGTGCATCAAATCGTCACC
ACTTCAGACCACCCTCTTTCTCCCCCTCCTCCTCCGCCTCCATATGGCTC
CACTCATCGTTATCACCCAGCGGCGACAGCTGCAGCAGCACCATCAGAAG
CAGTTGTTGTAGAAGACGTCTTTCCTTCTCCTCCACCGCCATCGCCTCCA
TCAAAAACGACGACCAACAACAAGAGCCCAACAGAGATACAGCACCATCC
TCTCCCCCACCCTCCACCCCTGCCTCCTCAGCCTCCTCCTCCTCCTCCCC
CCCCTCAGCAGATGTATCGCAGCTTCCACCTCCATCCTTATTATCATCAT
CACTAGAAGAAGACGCAGCAGCAGCAGCCTCGAGAGATCCCTACACCGGC
ACATACTCCACCTACGGTTATCCCCCTCCCCTTCCATCCTATTTCTACCC
TCCTCCTGCCTCCTTCTACCCTCCTCCTCCTCCCCCTTCATCCCTCGATC
CCCCTGCTTCCTCCCTCTCCACACCCTTATCATCGTCCTCCTCTGCTGCT
GCTGACGGTGATAGCAGCGTCACCTCCACGGCGTCTGCTCCTCCTTCACC
GTACCCTGATCCTTATGCTGGCTTTTACTACCCTCCTCCCTCCTTCTATC
CTCCTCCGCCCCCTCCTCCTCCATCATCATCTTCGCAAGACGAAGGCATG
TCCCAGGAGCAGCAGCAACAGCGGTGGATGGACGCAGCTTATGGCTCTTC
TGTTTCCAACCAAACCGTCGCAGGAGCAGGGGGAGGGGAAGGAGTGATGG
ACGGGTGGCAAGATGCCTATGGTCGGAGTATGTATGGCTATTATCCCCCT
CCGCCTCCTTACGGATATGACCCATACTACGCTGCTGCTGCTGCTGCTTC
GTGGCAGGAGGAGGAGGAAGGATGGAGCGAGGGCGAGGACGAGGACGAGG
ACGAGGAGGAGTGGTGGAGTGATGAGGAGGATGATGGTTATTACAGTGAC
GAGGAGGATGAGGAGGATGAGGGCTGGAGGGAGGAGGAGGAAGAGGAGTG
GAGGAGGTCGAAGGCAGGGATGGAAGACGATGTTGAGGAGGAGGGAGGGA
GGGATGGCGGGTTGGATGATCTGATAAGTGAGGCGATTACCTCGGTGACG
CTTGGGGAGAAGGCCGAGGATGAGGGGGACGAAGGAAGCGAGATAGGGAA
GGAGAAAGGGAAGGAAGGGGAGCAGACACAGTCTATGTCGCAGATGGGGG
AGGAGGTGGCGGTGGAGGAGTCGGAGGGAGTGAAGGAGGAAGAGGAGGAG
GGGGCACTTTCAGTTCGAAAGGAGGGCGAGGAGGAGGGGCAGGAGCAACC
GCAGCAAGAAGCAGCCAAAGATGAAAGGGATATTCAAGTCGCTGATGACA
AAGATAAGGATGAGGACGAGAGGGAAGGAGCGGAGGCAGGAAGCAAGGAT
GATGAAGAATCCCCTGTGTCTTCCCTTGATTCCTCTGGCGAGGAACTAAA
AGAGAAGGAGGGCGTGGACGAAGACGACAGCAACACTCCCGCTTCAGTCT
CCTTTTCTGCCTCCCTTGCCCGCGCTGCCGGCACGGCCTCTGCTGCCTTC
TCCTCCTCCATGGCCACTGCCCCTCTCCCCTCCTCCGCCTCCCTCCCTTC
CCCCGAAGAACCCAACCCCTTCGAACCCACGACCCCTTCCTCCCCCCCTT
CCTCCCCCCCTTCCTCCTCGGAGACGCCTGAAGCCAAGCCCAGGTGGTCC
TTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCAGCGGGGCCCC
CGATCCTTGGTGGAAAATGAAGTATTTGGAGCTGGTGGAGGGCACATCAT
TTGACCCTATGGAGGAAGGAAAAAGGCGGTCAATTTTTGGGTATTATCAA
AGAGAGGCGGAGGAGGTGCAGGACCTGCCGTTCTTGCCAGGAGGTGACCC
GGGGGAGGAGGTTGAGCTTCCTGTCTTCAGTCGTGCGCAATTCGTGAATA
CGACGTGGACGATTGGGATAGTAGGAGGGGGGGAGGGGGGGTGGAATCCG
TTTAAAAAAGTGCGGAGGACGAGGGTGTTTTTCAGGGAGGACGGACGAGT
GATTTGGGTGAATGGGGGAAACATCGGGGAGTGGAGTTATGACGCGAAGA
GCAACGTGTTTAGGTTTGGAAGGGAGACTTTTTTAAGTTGGAATGGAAGG
AGGAGTTTCCCGACGCTGCTGACGGAGGACCGGTCGCTTTATTACATGCA
GGGCTTTGTGATTGGCTGGGCACCGTTTAAGCCATTGAGTGTGTATGGGC
TTTGGCAGATGTACCGGGATGACGTGAGTGCGGAGGAGCGAGGGACGGCA
CCGTGGGAGGAGGAAGATGAGGGGGCGGAGGAGGGGGAGAACGGGGAGAA
GAAGAGGATTGTGAGAGGGTAG
back to top

protein sequence of NO05G00410.1

>NO05G00410.1-protein ID=NO05G00410.1-protein|Name=NO05G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=844bp
MARRRTRTKQMTTKATAGGILLACCSVSAFFWGRNPPSSSLSSRQAWRAS
NRHHFRPPSFSPSSSASIWLHSSLSPSGDSCSSTIRSSCCRRRLSFSSTA
IASIKNDDQQQEPNRDTAPSSPPPSTPASSASSSSSPPSADVSQLPPPSL
LSSSLEEDAAAAASRDPYTGTYSTYGYPPPLPSYFYPPPASFYPPPPPPS
SLDPPASSLSTPLSSSSSAAADGDSSVTSTASAPPSPYPDPYAGFYYPPP
SFYPPPPPPPPSSSSQDEGMSQEQQQQRWMDAAYGSSVSNQTVAGAGGGE
GVMDGWQDAYGRSMYGYYPPPPPYGYDPYYAAAAAASWQEEEEGWSEGED
EDEDEEEWWSDEEDDGYYSDEEDEEDEGWREEEEEEWRRSKAGMEDDVEE
EGGRDGGLDDLISEAITSVTLGEKAEDEGDEGSEIGKEKGKEGEQTQSMS
QMGEEVAVEESEGVKEEEEEGALSVRKEGEEEGQEQPQQEAAKDERDIQV
ADDKDKDEDEREGAEAGSKDDEESPVSSLDSSGEELKEKEGVDEDDSNTP
ASVSFSASLARAAGTASAAFSSSMATAPLPSSASLPSPEEPNPFEPTTPS
SPPSSPPSSSETPEAKPRWSFPSSSSSSSSSSSSGAPDPWWKMKYLELVE
GTSFDPMEEGKRRSIFGYYQREAEEVQDLPFLPGGDPGEEVELPVFSRAQ
FVNTTWTIGIVGGGEGGWNPFKKVRRTRVFFREDGRVIWVNGGNIGEWSY
DAKSNVFRFGRETFLSWNGRRSFPTLLTEDRSLYYMQGFVIGWAPFKPLS
VYGLWQMYRDDVSAEERGTAPWEEEDEGAEEGENGEKKRIVRG*
back to top
Synonyms
Publications