NO09G03160, NO09G03160 (gene) Nannochloropsis oceanica

Overview
NameNO09G03160
Unique NameNO09G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4134
Alignment locationchr9:917784..921917 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:917784..921917 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR002109Glutaredoxin
Homology
[Close]
BLAST of NO09G03160 vs. NCBI_GenBank
Match: EWM27488.1 (hypothetical protein Naga_100099g23 [Nannochloropsis gaditana])

HSP 1 Score: 512.3 bits (1318), Expect = 1.600e-141
Identity = 277/328 (84.45%), Postives = 296/328 (90.24%), Query Frame = 0 
Query:   41 MSAKTAFCLAFMALPTASAFLFPASHPIST-QVGQRV---QPTCGMRVAPETRRGAAVAASAATQAKADTERELTLADVKGSNSDPVWSEVPEELYFIANYAAALGGEYPPENVDKSYWEQIKPATYTKLAALAKTADPTTISSGQYLMLMEAIVRDAXXXXXXXXXXXXXXXXLTEQQEYIYNWIQTVPNSEFLKFKEEYKLEDMSPADWWSKIDEIAKDNAAKGVNLPEMTLDLTKDDFLGVAREEFVKSIKQFLKVESELYPVFIISKPGCEEGAKLVNAFNKTMDIPVRTYEVFGFDAFNFKVKADYDWGEARLEAIEELTGSK 365
            MSA+TAFCLA +ALP+ASAFLFP+S P+S+   G      +  CG RVAPETRRGA VAASAATQAKADT RELTLADVKGSN+D VW+EVPEELYFIANYAAALGGEYPPENVDKSYW+QIKPATYTKLAALAKTADP+TIS GQYLMLMEAIVR  XXXXXXXXXXXXXXXX  EQQEYIYNWIQ VPN EFLKFKEE K+E+MSPA+WW KIDE+AK+NAAKG+ LPEMTLDLT DDFLGVAREEFVKSIKQFLKVESELYPVFIISKPGC EGAK+V  FNKTMDIPVRTYEVFGFDAF FKVKADYDWGEARLEAIEELTGS+
Sbjct:    1 MSARTAFCLAIVALPSASAFLFPSSSPLSSLTTGPPTLSGKSACGFRVAPETRRGATVAASAATQAKADTGRELTLADVKGSNTDAVWAEVPEELYFIANYAAALGGEYPPENVDKSYWDQIKPATYTKLAALAKTADPSTISQGQYLMLMEAIVRXXXXXXXXXXXXXXXXXXXXEQQEYIYNWIQNVPNDEFLKFKEENKMENMSPAEWWGKIDEVAKENAAKGIKLPEMTLDLTTDDFLGVAREEFVKSIKQFLKVESELYPVFIISKPGCAEGAKMVELFNKTMDIPVRTYEVFGFDAFKFKVKADYDWGEARLEAIEELTGSQ 328
The following BLAST results are available for this feature:
BLAST of NO09G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27488.11.600e-14184.45hypothetical protein Naga_100099g23 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010852NSK010852Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03160.1NO09G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588425gene_4228Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g23gene3070Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03160.1NO09G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03160 ID=NO09G03160|Name=NO09G03160|organism=Nannochloropsis oceanica|type=gene|length=4134bp
CGCTGTCGTCGCCGTAAGCCAGAGAGCTTGACCCTTGCCCCAGATACCAT
TTCTTTATCCCCGTTTTTCTCCTCTTTGCCTTTCCCTGCATGCATGGTTT
TGCGACTCAGCATCTTTACGATGTCGGCATCTGGGTGGTCGCGAGGAAGA
GGCAGGCACTGGACGGGTGAGCCTTGCTCTACACTTCCTCTCCTGGTCGC
CTTTTGCCTCCAAGGGTTGTCATAAGTGCAAGCCGACCTTTGCTGGGGAC
TTCATGGTCTTGGGATGGCCTTGGCAAGCATCGGCCACGTTCACAATCCT
TTACTTTCCCTCACGCTGCACGGCGTATCCAATCAGGGAGAATGACCTAC
ATGATGGTCCGCATTGCGACACCTCAAGATACACGGCAATCCCTCCTCTT
TCCCATGCGCGTGGGTGGGTTGGGTCGGGTCGCTTGGCTAGGGTTGAAAG
GTCAACCAGCGGTCAGGACACGGGACGCATCGACCACCGCGGTGGCTGGA
TACTGAGAGGCATGTTTGCTGCTGCTACGCAGGTGCCTTCGCAAGCCTTG
GGCCGGACTTTGAAACCCGCCGGCGTGCAGTGTCCAAGGCATGCTGCATC
TGGACAATCGATCCGATACCGCCTTTCAGGCTTTATGGCGCTCACATTTA
TTCCTACCCCACTGCGTACATCACACCACACAGACTATAGCCTCGTTGTT
CAGATCGACCATGTCAGCGAAGACGgtaagtcaatcaatctctcttgtcc
gtgttcgaccaaaagcttgccctgtctcgactcaagcgccctgcaagcag
ccgtgaatgataaccagaggaatgaggagggggcgggggacggaagtttg
atcaccaggataaggtttaaatgcagcctcgatgtccactggtgtgcgtg
tgctctacctttgcgccgggtcgcatgcctcgtgtatgtgaaggattgca
aaacaagactccctgtaactgtctctacaaccccagcaccagcacatctt
tctccccttgaacaatcttctcgacacattatctcacctcccgctctccc
tccgttcccccctccttctcactcacacagGCCTTCTGCCTCGCCTTCAT
GGCCCTCCCCACTGCCTCCGCCTTCCTCTTCCCCGCCTCCCACCCCATCT
CCACCCAAGTCGGCCAACGCGTTCAACCCACCTGTGGCATGCGCGTTGCC
CCCGAGACCCGACGAGGCGCCGCTGTCGCTGCTTCGGCCGCCACCCAAGC
CAAGGCCGACACGGAGCGGGAGCTTACTTTGGCTGATGTCAAGGGCAGCA
ACTCGGACCCTGTCTGGAGCGAGGTACCGGAGGAGCTCTACTTTATTGCC
AACTACGCCGCGGCCCTCGGTGGGGAATACCCCCCCGAAAACGTGGACAA
GTCGTACTGGGAACAGATCAAGCCGGCGACCTACACTAAGCTGGCTGCCC
TTGCCAAGACGGCGGACCCGACCACCATCTCCTCCGGGCAGTACTTGATG
CTGATGGAGGCGATCGTGCGTGATGCCATCGCGGCGGACCCCAAGATGAC
CCGTCCCTCCATGGAAGAGCCCACCTTGACGGAGCAGCAGGAGTACATCT
ACAATTGGATCCAGACCGTCCCCAATTCCGAGTTCCTGAAGgtgaggaaa
gagcaggaaggagggagggaaggagggagggaacaagggtcagcaatcat
gggaaagggaaggacggagtcaaggggaaatgaccaacggggagaagagg
gacaagagaaggggaaaagaggatgagggtgcgtttgaactcatggggcc
ttcctgtcgtgctttcttcacctttcatccctccttccgtccatcccaca
gTTCAAGGAGGAGTACAAGTTGGAGGACATGAGTCCTGCCGATTGGTGGT
CTAAGATCGACGAAATCGCCAAGGACAACGCCGCGAAGGGCGTTAACCTC
CCCGAGgtacgtcctctccctccctccctcttttccctcttccccccatc
cttcttttgccgtttttcccaccctttagcttcctaccgttgctgaccac
gcccttccctccttctctctctccctccctccccccctctttccccttag
ATGACTTTGGACCTAACCAAGGACGACTTTTTGGGTGTGGCCCGCGAGGA
ATTCGTGAAGTCCATTAAGCAGTTCCTCAAGgtttgtccttacccctgcc
ctccctccctccctccctccctccctccctccctccctcggtacgtccat
ggtctgtgtctctaaaaactgacgcccaaccctgccctccctccctccct
ccctccctccctccctccctcccgctcctcaccagGTGGAGTCCGAGCTC
TACCCTGTATTTATCATCTCCAAGCCCGGCTGTGAGGAGGGTGCCAAGCT
AGTGAACgtgagtcgggccgagggagggagggagggagggaagagcatgt
ctcatgaccggcgagttccagcagagaggaggttgcttaccaaaataacg
tctcgtttccctccctccctccctcagGCCTTCAACAAGACCATGGACAT
CCCTGTGCGCACGTACGAGGTATTTGGTTTCGATGCCTTCAACTTCAAGG
TCAAGGCTGACTACGATTGGGGCGAGGCACGGCTGGAGGCGATTGAGGAG
CTGACCGGCAGCAAGgtcaggaaggagggagggagggaaggggggggtga
gagtgggagggtgggaaggggaatggataatcactttggtgtaagccaca
acggacgggattgaacgagtcgacaggcgacatcatggataagcccctca
aaaaagcaagcccatctgacacgccctccttccccccccccctccctccc
tccctccttctcgcctcacagGAGTTGCCGTTGGTGTACGTGGGTGGTAA
GCTGATCGGCGGCGCCGAGAAAGTTAATGCTCAAATTGCAGACGGCAGCC
TGAAGAAGACTGTGGCGACCTTGCGACAGgtagacagggtgggaaggagg
gggggggatgacctcacaataaagagggatttgggttgaatgagaggggg
atctctctctcccagccaatgtggggatataattacaaattctttcatat
tggtttctttaatgcactcatgctcgtgtctatgtcgtggtggacacggc
taggttctatctttcaacttaagggagaaaagaccttgtgcaattgaagc
acacacacaagcagcagctgcttaccccctcctcccttccccccgttctt
cgcgcctttttctccttcacagGCCATCGTGGACATGGTGGAGGCTCGCT
TTCCCAAGCAAGAGGAGGAGAGCATGTATATTGGCATGCGTAAGGTGACA
GCAGCGGAATATAAGGCCTATGAGGCGTTTCAGGCCAAGACAGGCGGATT
GGACCCCTTGGAGGTGAACCGGAAGAAGGCCAAGGAGGCGGCGCAGAATA
AGTAGGGGCTTGGGTTAGTTCTGGTTGGGAGGAGGGGGAAAAGAGGGAAG
GAGGGAGAAGGGAGTGTAGGGCGGGACAGTGGTGATGGGGGAGGGAGTAT
GTGTGCGTGTTTTTTATAAACGCCTAAGTGTCTCGTGGTACATTTTAAAG
GAGGGAAGGAAGGTAGATTGATTGGGAGGGACGGATAAAAGCGCCTGAGC
GCTGTGTCGTTTGAGATAAGATGGGATGGCGAAAGACAAAAGAAGAGAAA
GACGAAGAGAAGGAGGGAAAAGAGCTACCCGGTGGAGAAGGGTCGACGCT
TTATTAGGGTTATGTCTCTTTCTTTCATGTTTTCACCTCCTCATGCGCCT
GTCTATGTGCATGTGTGTCTGTGTTGTGCGTGCGTGCACTCCTACGTGTG
CGATGTGCCTACGTGTGGGGGGGGTTCGTGTGCACGGGGGTAGTGTGTAG
GTGTACTACTACTGCTACTGCTATTCGCTTATGATATCGGTGCGAGGGCT
CAACTCACATTTCTGTGTGACCACCAAACCCAACCATCCCCCCCTTTCCT
CCTTCCCTTGTTCCTCCTCACTGTTCTCTCTCCCTTGGACACAGAAGTAG
ATGTGCCCAGGCAGGGGTGGCAGTAGCAGCAGCAGCAGCAGCAGCGACGA
AGAGATAAGGAAATAAAAACCAGGAGGGAAAACA
back to top

protein sequence of NO09G03160.1

>NO09G03160.1-protein ID=NO09G03160.1-protein|Name=NO09G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MLHLDNRSDTAFQALWRSHLFLPHCVHHTTQTIASLFRSTMSAKTAFCLA
FMALPTASAFLFPASHPISTQVGQRVQPTCGMRVAPETRRGAAVAASAAT
QAKADTERELTLADVKGSNSDPVWSEVPEELYFIANYAAALGGEYPPENV
DKSYWEQIKPATYTKLAALAKTADPTTISSGQYLMLMEAIVRDAIAADPK
MTRPSMEEPTLTEQQEYIYNWIQTVPNSEFLKFKEEYKLEDMSPADWWSK
IDEIAKDNAAKGVNLPEMTLDLTKDDFLGVAREEFVKSIKQFLKVESELY
PVFIISKPGCEEGAKLVNAFNKTMDIPVRTYEVFGFDAFNFKVKADYDWG
EARLEAIEELTGSKELPLVYVGGKLIGGAEKVNAQIADGSLKKTVATLRQ
AIVDMVEARFPKQEEESMYIGMRKVTAAEYKAYEAFQAKTGGLDPLEVNR
KKAKEAAQNK*
back to top
Synonyms
Publications