NO10G03450, NO10G03450 (gene) Nannochloropsis oceanica

Overview
NameNO10G03450
Unique NameNO10G03450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length807
Alignment locationchr10:980018..980824 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:980018..980824 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03450 vs. NCBI_GenBank
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana])

HSP 1 Score: 145.6 bits (366), Expect = 1.200e-31
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 0 
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIK 149
            MRF  + L    V A    + S+K GGP+ RVKRM+   T  TAATA +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATATSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIK 145
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BLAST of NO10G03450 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.4 bits (363), Expect = 2.800e-31
Identity = 75/148 (50.68%), Postives = 103/148 (69.59%), Query Frame = 0 
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIK 149
            MRF  + L    V A    + S+K GGP+ RVKRM+   T  TAAT+ +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIK 145
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BLAST of NO10G03450 vs. NCBI_GenBank
Match: XP_005852429.1 (hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526] >EKU23403.1 hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.7 bits (169), Expect = 8.700e-9
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:   57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIK 149
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAME 192
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BLAST of NO10G03450 vs. NCBI_GenBank
Match: EWM20189.1 (hypothetical protein Naga_101121g1 [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 8.700e-9
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:   57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIK 149
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAME 192
The following BLAST results are available for this feature:
BLAST of NO10G03450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25317.11.200e-3151.35hypothetical protein Naga_100281g8 [Nannochloropsi... [more]
XP_005854419.12.800e-3150.68hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
XP_005852429.18.700e-936.96hypothetical protein NGA_0725900 [Nannochloropsis ... [more]
EWM20189.18.700e-936.96hypothetical protein Naga_101121g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03450.1NO10G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03450.1NO10G03450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03450 ID=NO10G03450|Name=NO10G03450|organism=Nannochloropsis oceanica|type=gene|length=807bp
ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGgtaagacagagggagagactgtgctcatggaaca
gacgaaaaggcaacgacctgtgcgcgtcactcagcattttccccgtttcc
ctgcgcccgcccgcccttcctccctcttccatcctcttcctgcagCCACA
CCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAA
AGAGGACTTCACGAAAACAGATgtacgtattacaagagaaagcgaatcta
agaaaagtatgcattccttcccctccacagaccctcggcgtccttctctt
caaaaagggagagaatcaagcagctcttgtatccttcccttggagaagat
caaatgctcgctttcgcatgtgcttccttttttcctttgctccatccctg
acatcacgtctttctcattccatcacacacgcacttcatcgaaattatag
AGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAA
GGCATGA
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protein sequence of NO10G03450.1

>NO10G03450.1-protein ID=NO10G03450.1-protein|Name=NO10G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKA*
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Synonyms
Publications