NO16G00630, NO16G00630 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G00630
Unique Name	NO16G00630
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1693
Alignment location	chr16:222289..223981 -

Link to JBrowse

Properties


Property Name	Value
Description	Gdp-mannose-epimerase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:222289..223981 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0050662	coenzyme binding
GO:0005488	binding
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR001509	Epimerase_deHydtase_N

Homology

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BLAST of NO16G00630 vs. NCBI_GenBank
Match: EWM24067.1 (gdp-mannose -epimerase [Nannochloropsis gaditana])

HSP 1 Score: 638.3 bits (1645), Expect = 1.600e-179
Identity = 316/373 (84.72%), Postives = 330/373 (88.47%), Query Frame = 0

Query:    7 PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALGGKEKGLVSSIPESDLASNSNAGIQV 380
            PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWK+NEFM EPEFCDEF  VDLREL+NCIKASKGC+HVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKE DAWPAKPQEVYGLEKLYHEEMALAYSRDFP+VSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMS+TA  PLNLGTE+M                           GVRGRNSDNTLIRE LGWEPLISI++GLRETYFWIKGQIEKERAAG+VFDYSSSKVVVQTT+SLDAL  K++   +SIPESD ASN   G+QV
Sbjct:    6 PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKKNEFMAEPEFCDEFFLVDLRELENCIKASKGCHHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEGDAWPAKPQEVYGLEKLYHEEMALAYSRDFPLVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSDTATMPLNLGTEQM---------------------------GVRGRNSDNTLIREMLGWEPLISIEDGLRETYFWIKGQIEKERAAGVVFDYSSSKVVVQTTESLDALASKQE-KSNSIPESDSASN---GVQV 347

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BLAST of NO16G00630 vs. NCBI_GenBank
Match: CBN77708.1 (nad-dependent epimerase/dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 536.2 bits (1380), Expect = 8.400e-149
Identity = 252/345 (73.04%), Postives = 290/345 (84.06%), Query Frame = 0

Query:   12 KKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALGGK 357
            +KV + GG GFIGSHLA+RLK +G YVV ADWK NEFM   EFC  F   DLR L NC+ AS GC  VYNLAADMGGMGFIESNQ VL++NNTM+SSN+LEAAR N A+RYFY+STACVYNEDLQLDPSNPGLKEADAWPAKPQ+ YGLEKLYHEEM  AY+ DFP+ +R+AR+HNVYGP GTWKGGREKAPAAFCRKA+ ST+ FE+WGDGEQTRSFM++DDCVEG +RIM  +  + PLNLGTEEMVSMNKFA IAM FE K LPI+HIPGP+GVRGRNSDNTLIRE+L W P ++I EGLR+TYFWIK Q+E E+AAG   +Y +S+VVVQTT+SL+ L  K
Sbjct:   36 RKVFIGGGAGFIGSHLAKRLKGEGWYVVCADWKANEFMEPKEFCSVFAHTDLRSLPNCVSASVGCEQVYNLAADMGGMGFIESNQCVLLFNNTMISSNILEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEADAWPAKPQDTYGLEKLYHEEMCKAYAADFPIETRMARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGTIRIMEGDYRL-PLNLGTEEMVSMNKFAAIAMGFEGKDLPIRHIPGPEGVRGRNSDNTLIREKLSWAPSVTIAEGLRKTYFWIKDQVEAEKAAGTGNNYDTSEVVVQTTESLEQLSHK 379

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: XP_009037231.1 (hypothetical protein AURANDRAFT_69812 [Aureococcus anophagefferens] >EGB07852.1 hypothetical protein AURANDRAFT_69812 [Aureococcus anophagefferens])

HSP 1 Score: 495.7 bits (1275), Expect = 1.300e-136
Identity = 234/341 (68.62%), Postives = 276/341 (80.94%), Query Frame = 0

Query:   14 VLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGI-VFDYSSSKVVVQTTDSLDAL 354
            V + GGGGFIGS LA  LKK G YV+ ADWK+NEFM  PEFCDEF   DLR   NC+K   GC  VYNLAADMGGMGFI+SN+SVLM+NNTM+S NVLEAAR  G +RYFYSS+ACVYN+DLQLDP NPGLKEA AWPAKPQ+ YGLEKLY EEM + Y RDF +  R ARFHNVYGP GTWKGGREKAPAAFCRKAV +T  FE+WGDG+QTRSFM++DDCVEG+ +IM S+   +PLNLG++EM+ MN FA++A+SFE+K LPIKHIPGP+GVRGRNSDNT+I+E+LGW P I +  GL++TYFWIK  +EK++AAGI       S++VVQ TD LD L
Sbjct:   29 VAIGGGGGFIGSWLALDLKKKGFYVIAADWKKNEFMEVPEFCDEFHLCDLRLQANCLKVVDGCRDVYNLAADMGGMGFIKSNESVLMYNNTMISFNVLEAARCKGVKRYFYSSSACVYNDDLQLDPDNPGLKEAGAWPAKPQDTYGLEKLYAEEMGIVYGRDFGIKFRCARFHNVYGPRGTWKGGREKAPAAFCRKAVCATSEFEMWGDGKQTRSFMFIDDCVEGIQKIMDSD-CEQPLNLGSDEMIDMNDFAKLALSFESKELPIKHIPGPEGVRGRNSDNTMIKEKLGWAPSIPVAVGLKKTYFWIKDMVEKDKAAGIDTAKLGVSEIVVQKTDELDEL 368

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: XP_005703429.1 (GDP-D-mannose-3',5'-epimerase [Galdieria sulphuraria] >EME26909.1 GDP-D-mannose-3',5'-epimerase [Galdieria sulphuraria])

HSP 1 Score: 492.7 bits (1267), Expect = 1.100e-135
Identity = 225/346 (65.03%), Postives = 276/346 (79.77%), Query Frame = 0

Query:   13 KVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALGGKEK 359
            +VLV G GGFIGSHLA++LK+ G YV+ ADWK NE+  + +FCDEFL VDLREL NC+KASK C+HVYNLAADMGGMGFI+SN SV+++NNTM+S N+LEAARRN  +RYFY+S+AC+Y E+ QLDP NPGLKE+DAWPA+PQ+ YGLEKL  EEMA+ Y RDF M +RI RFHN+YGP+GTWKGGREKAPAAFCRK + S   FE+WGDGEQTRSF Y+DD VEGV+R+M S+ A +PLN+G+EEM+SMN  A++ M FENK L IKHIPGP+GVRGRNS+N L R+ LGWEP + + EGL+ TY WIK QIE+E A G   D   +  VV T    D++  K +
Sbjct:   11 RVLVTGAGGFIGSHLAKKLKEKGQYVIAADWKENEYFKQEDFCDEFLLVDLRELQNCLKASKDCDHVYNLAADMGGMGFIQSNHSVILYNNTMISFNMLEAARRNNVKRYFYASSACIYPENKQLDPKNPGLKESDAWPAQPQDAYGLEKLASEEMAIHYGRDFKMETRIGRFHNIYGPYGTWKGGREKAPAAFCRKCIVSDTEFEMWGDGEQTRSFCYIDDAVEGVIRLMESDFA-EPLNIGSEEMISMNDMAKLIMKFENKELKIKHIPGPEGVRGRNSNNDLCRKVLGWEPKVDLAEGLKRTYIWIKSQIEEESAQGKKNDEYKTSKVVPTHSPTDSVAAKRR 355

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: XP_002179589.1 (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >EEC48575.1 nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 491.1 bits (1263), Expect = 3.100e-135
Identity = 239/357 (66.95%), Postives = 281/357 (78.71%), Query Frame = 0

Query:    1 MSNSSTPLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALGGKE 358
            M   + P   GKKV V GG GFIGSH+ARRLK  G YVVV DWK+NEFM   EFCDEF+  DLR+L+    A +GC  VYNLAADMGGMGFI SN+SVL +NNT +S N+LEAARRN  + +FYSS+ACVYNE  Q DP+NPGL EADAWPA+PQ++YGLEKLY EEMALAY RDF M  RIARFHN+YGP GTWKGGREKAPAAFCRKA+ STEHFE+WGDG+QTRSF Y+DDCVEGVLR+M S+  V P+NLG+ EMV M +FA+IA+SFE K LPIKHI GP GVRGRNS+N LI E+LGWEP + I++GLR TYFWIK QI+ E   G    YS+S++V Q  D+L  LG ++
Sbjct:    3 MKEFTLPAGEGKKVCVGGGAGFIGSHIARRLKAVGYYVVVVDWKKNEFMENSEFCDEFILGDLRKLEVACSACEGCAQVYNLAADMGGMGFIVSNESVLAFNNTAISMNMLEAARRNKVKDFFYSSSACVYNEAKQEDPANPGLIEADAWPARPQDMYGLEKLYAEEMALAYGRDFDMNVRIARFHNIYGPRGTWKGGREKAPAAFCRKAITSTEHFEMWGDGKQTRSFTYIDDCVEGVLRLMFSDCDV-PINLGSTEMVDMIEFAQIALSFEAKKLPIKHIEGPMGVRGRNSNNKLIMEKLGWEPTMQIKDGLRLTYFWIKEQIDAEGGDGAA--YSTSEIVQQVDDTLMQLGNEK 356

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: XP_002291793.1 (dual function enzyme: UDP-glucose 4-epimerase [Thalassiosira pseudonana CCMP1335] >EED90644.1 dual function enzyme: UDP-glucose 4-epimerase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 491.1 bits (1263), Expect = 3.100e-135
Identity = 235/352 (66.76%), Postives = 279/352 (79.26%), Query Frame = 0

Query:    7 PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENK-YLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALGGKE 358
            P   G KV V GG GFIGSH+A+RLK+ G  V V DWK NEFM + EFCDEF+  DLR+L+  +KA K C  VYNLAADMGGMGFI SN+SVL +NNT +S N+LEAARRN  + +FYSS+ACVYNE  Q DP NPGL E+DAWPA+PQ++YGLEKLY EEMALAY RDFP+  RIARFHN+YGP GTWKGGREKAPAAFCRKA+ S + FE+WGDG+QTRSF Y+DDCVEGVLR+  S+  V P+N+G+ EM+ MN FA+ A+S+ENK +LP+KHI GP GVRGRNS+N LI E+LGWEP   I +GLR+TYFWIKG+IEKE AAG   DYS S+VV Q  DSL  LG +E
Sbjct:   10 PAGNGAKVCVGGGAGFIGSHIAKRLKEAGYKVTVVDWKENEFMEKDEFCDEFILDDLRKLEVAVKACKDCLQVYNLAADMGGMGFICSNESVLSFNNTSISMNMLEAARRNKCKDFFYSSSACVYNEAKQEDPENPGLIESDAWPARPQDMYGLEKLYAEEMALAYGRDFPLNIRIARFHNIYGPRGTWKGGREKAPAAFCRKAITSEKEFEIWGDGKQTRSFTYIDDCVEGVLRLTFSDCDV-PINMGSTEMIDMNDFAKTALSYENKEHLPLKHIEGPMGVRGRNSNNALILEKLGWEPTTKIVDGLRKTYFWIKGEIEKEVAAGSTLDYSKSEVVQQVDDSLMQLGNEE 360

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: OEU18515.1 (putative bifunctional dTDP-glucose 4,6-dehydratase/UDP-glucuronate decarboxylase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 490.3 bits (1261), Expect = 5.300e-135
Identity = 233/348 (66.95%), Postives = 281/348 (80.75%), Query Frame = 0

Query:    7 PLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALG 355
            P   GKKV V GG GFIGSH+A+RLK+ G YV+  DWK NEFM   EFCDEF++ DLR+L+    A K C+ VYNLAADMGGMGFI SN+SVL +NNT +S N+LEAARRN  + +FYSS+ACVYNE  Q DP+NPGL E+DAWPA+PQ++YGLEKLY EEMALAY RDF +  R+ARFHN+YGP GTWKGGREKAPAAFCRKA+ STEHFE+WGDG+QTRSF Y+DDCVEGVLR+M S+ AV P+N+G+ EMV M +FA IA+SFE+K +PIKHI GP GVRGRNS++ LI E+LGWEP I I +GL++TYFWIKG+IEKE   G   +YS+S++V Q  DSL  LG
Sbjct:   11 PKGEGKKVCVGGGAGFIGSHIAKRLKEAGWYVICVDWKTNEFMKNDEFCDEFIEGDLRKLEVACNACKDCSQVYNLAADMGGMGFIVSNESVLSFNNTAISMNMLEAARRNNVKDFFYSSSACVYNEAKQEDPANPGLIESDAWPARPQDMYGLEKLYSEEMALAYGRDFDINIRLARFHNIYGPCGTWKGGREKAPAAFCRKALTSTEHFEMWGDGKQTRSFTYIDDCVEGVLRLMFSDCAV-PINMGSTEMVDMIEFANIALSFEDKKIPIKHIDGPMGVRGRNSNSKLILEKLGWEPTIKISDGLKKTYFWIKGEIEKE--GGEANEYSTSEIVQQVDDSLMQLG 355

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: GAX28209.1 (GDP-D-mannose 3', 5'-epimerase [Fistulifera solaris])

HSP 1 Score: 488.0 bits (1255), Expect = 2.600e-134
Identity = 237/354 (66.95%), Postives = 279/354 (78.81%), Query Frame = 0

Query:    1 MSNSSTPLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALG 355
            M   + P   GKKV V GG GFIGSH+A+RLK  G YVVV DWK NEFM + EFC+EF+  DLR+L+   +A +GC  VYNLAADMGGMGFI SN+SVL +NNT +S N+LE ARR G + +FY+S+ACVYNE  Q DP+NPGL E+DAWPA+PQ++YGLEKLY EEMALAY RDF M  RIARFHN+YGP GTWKGGREKAPAAFCRKA+ ST+HFE+WGDG+QTRSF ++DDCVEGVLR+  S+  V P+NLGT EMV M +FA+IAMSFE+K LPIKHI GP GVRGRNS+N LI E+LGWEP I I EGL++TYFWIK QIEKE   G    YS S++V Q  DSL  LG
Sbjct:    1 MKEFTLPQGEGKKVCVGGGAGFIGSHIAKRLKTAGYYVVVVDWKENEFMEKDEFCNEFILDDLRKLEVACRACEGCTQVYNLAADMGGMGFIVSNESVLAFNNTAISMNMLEGARRAGVKDFFYASSACVYNEAKQEDPANPGLIESDAWPARPQDMYGLEKLYAEEMALAYGRDFDMNIRIARFHNIYGPRGTWKGGREKAPAAFCRKALTSTDHFEMWGDGKQTRSFTFIDDCVEGVLRLTFSDCNV-PINLGTTEMVDMIEFAKIAMSFEDKNLPIKHIEGPMGVRGRNSNNVLIMEKLGWEPTIKIAEGLKKTYFWIKEQIEKE--GGDATKYSHSEIVQQVDDSLMQLG 351

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: GAX17364.1 (GDP-D-mannose 3', 5'-epimerase [Fistulifera solaris])

HSP 1 Score: 487.3 bits (1253), Expect = 4.500e-134
Identity = 237/354 (66.95%), Postives = 278/354 (78.53%), Query Frame = 0

Query:    1 MSNSSTPLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSLDALG 355
            M   + P   GKKV V GG GFIGSH+A+RLK  G YVVV DWK NEFM + EFC+EF+  DLR+L+   +A +GC  VYNLAADMGGMGFI SN+SVL +NNT +S N+LE ARR G + +FY+S+ACVYNE  Q DP+NPGL E+DAWPA+PQ++YGLEKLY EEMALAY RDF M  RIARFHN+YGP GTWKGGREKAPAAFCRKA+ ST+HFE+WGDG+QTRSF ++DDCVEGVLR+  S+  V P+NLGT EMV M +FA+IAMSFE K LPIKHI GP GVRGRNS+N LI E+LGWEP I I EGL++TYFWIK QIEKE   G    YS S++V Q  DSL  LG
Sbjct:    1 MKEFTLPPGEGKKVCVGGGAGFIGSHIAKRLKAAGYYVVVVDWKENEFMEKDEFCNEFILDDLRKLEVACRACEGCTQVYNLAADMGGMGFIVSNESVLAFNNTAISMNMLEGARRAGVKDFFYASSACVYNEAKQEDPANPGLIESDAWPARPQDMYGLEKLYAEEMALAYGRDFDMNIRIARFHNIYGPRGTWKGGREKAPAAFCRKALTSTDHFEMWGDGKQTRSFTFIDDCVEGVLRLTFSDCNV-PINLGTTEMVDMIEFAKIAMSFEEKNLPIKHIDGPMGVRGRNSNNVLIMEKLGWEPTIKIAEGLKKTYFWIKEQIEKE--GGDATKYSHSEIVQQVDDSLMQLG 351

[Close]

BLAST of NO16G00630 vs. NCBI_GenBank
Match: ACM47361.1 (GDP-mannose-3',5'-epimerase [Caragana korshinskii])

HSP 1 Score: 470.3 bits (1209), Expect = 5.600e-129
Identity = 216/350 (61.71%), Postives = 278/350 (79.43%), Query Frame = 0

Query:   13 KVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAWPAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQT-----TDSLDALGGKE 358
            ++ + G GGFI SHLARRLK +G+Y++ +DWK+NE MTE  FCDEF  VDLR +DNC+K ++G  HV+NLAADMGGMGFI+SN SV+M+NNTM+S N++EAAR NG +R+FY+S+AC+Y E  QL+ +N  LKE+DAWPA+PQ+ YGLEKL  EE+   Y++DF +  RI RFHN+YGP+GTWKGGREKAPAAFCRKA+ ST+ FE+WGDG QTRSF ++D+CVEGVLR+  S+   +P+N+G++EMVSMN+ AEI +SFENK +PI HIPGP+GVRGRNSDNTLI+E+LGW P + +++GLR TYFWIK Q+EKE+A G+      S  VVQT       SL A  GKE
Sbjct:   29 RISITGAGGFIASHLARRLKTEGHYIIASDWKKNEHMTEDMFCDEFHLVDLRVMDNCLKVTEGVGHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEEVCKHYNKDFGIECRIGRFHNIYGPYGTWKGGREKAPAAFCRKAITSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFR-EPVNIGSDEMVSMNEMAEIVLSFENKNIPIDHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAQGLDLSVYGSSKVVQTQAPVQLGSLRAADGKE 377

The following BLAST results are available for this feature:

BLAST of NO16G00630 vs. NCBI_GenBank

BLAST of NO16G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM24067.1	1.600e-179	84.72	gdp-mannose -epimerase [Nannochloropsis gaditana]	[more]
CBN77708.1	8.400e-149	73.04	nad-dependent epimerase/dehydratase [Ectocarpus si...	[more]
XP_009037231.1	1.300e-136	68.62	hypothetical protein AURANDRAFT_69812 [Aureococcus...	[more]
XP_005703429.1	1.100e-135	65.03	GDP-D-mannose-3',5'-epimerase [Galdieria sulphurar...	[more]
XP_002179589.1	3.100e-135	66.95	nad-dependent epimerase/dehydratase [Phaeodactylum...	[more]
XP_002291793.1	3.100e-135	66.76	dual function enzyme: UDP-glucose 4-epimerase [Tha...	[more]
OEU18515.1	5.300e-135	66.95	putative bifunctional dTDP-glucose 4,6-dehydratase...	[more]
GAX28209.1	2.600e-134	66.95	GDP-D-mannose 3', 5'-epimerase [Fistulifera solari...	[more]
GAX17364.1	4.500e-134	66.95	GDP-D-mannose 3', 5'-epimerase [Fistulifera solari...	[more]
ACM47361.1	5.600e-129	61.71	GDP-mannose-3',5'-epimerase [Caragana korshinskii]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL150	nonsL150	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR018	ncniR018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR031	ngnoR031	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003052	NSK003052	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO16G00630.1	NO16G00630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593206	gene_5941	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100063g17	gene6408	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO16G00630.1	NO16G00630.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO16G00630 ID=NO16G00630|Name=NO16G00630|organism=Nannochloropsis oceanica|type=gene|length=1693bp
CACTTTACAGCAAAGCAACAATGAGCAACTCCTCTACCCCTTTGGTGACA
GGCAAGAAAGTCCTGGTGGCCGGCGGCGGCGGCTTCATCGGCTCCCACCT
GGCCCGTCGTCTCAAGAAGGACGGGAACTATGTCGTGGTGGCCGACTGGA
AGCGCAACGAATTCATGACAGAGCCCGAGTTCTGCGATGAGTTTCTCCAA
GTCGATTTGCGGGAACTTGACAACTGCATCAAGGCTTCCAAGGGCTGCAA
CCACGTGTACAATTTAGCTGCAGACATGGGCGGAATGGGCTTCATCGAGT
CCAATCAGTCCGTGCTCATGTGGAACAACACCATGGTCTCCTCCAATGTC
CTTGAGGCCGCGCGTCGTAATGGCGCTGAGCGTTATTTCTACTCCTCGAC
GGCTTGTGTTTACAACGAGGATCTGCAGCTTGACCCGTCCAATCCCGGGT
TGAAGGAGGCGGATGCCTGGCCCGCCAAGCCGCAAGAGGTGTACGGGCTT
GAAAAGCTTTACCATGAAGAAATGGCACTGGCGTACTCCCGGGACTTCCC
CATGGTGTCGCGCATTGCTCGgtaagtttgacacaggagaggaggggaaa
gaggggatgacggaatgtgtatggtcctttctagtcaaagagacttgccc
ggaagcatcatcactgtcaattgtgttcatcattgacattttcgtaggat
gcttcgtcttgtcaatatttcgcgcagcttttcaccatcccttcctccca
ttctccccccctctcagATTCCACAATGTCTACGGCCCATTCGGCACCTG
GAAGGGCGGTCGTGAAAAGGCCCCGGCTGCCTTCTGCCGCAAGGCCGTGG
GGAGCACGGAGCACTTCGAAGTGTGGGGAGATGGGGAGCAGACGCGATCG
TTCATGTATGTCGATGATTGTGTGGAGGGAGTGTTGCGCATCATGATGAG
TGAGACGGCGGTCAAGCCCTTGAACCTCGGCACGGAAGAGATGGTGTCGA
TGAACAAATTTGCTGAGATTGCCATGAGCTTCGAAAACAAGTATTTGCCC
ATCAAGCACATCCCGGGCCCGCAAGGCGTGCGTGGACGTAACTCTGACAA
TACTCTCATTCGGGAGGAGCTTGGCTGGGAGCCTCTCATCTCAATTCAGG
AAGGCCTTCGCGAAACCTACTTTTGGATCAAGGGACAGATTGAGAAGGAG
CGCGCGGCCGGGATAGTGTTTGACTACTCTTCCTCTAAGGTGGTTGTCCA
GACGACGGATTCCCTGGATGCGCTGGGCGGGAAAGAGAAGGGGTTGGTGA
GCAGCATTCCGGAATCGGACTTGGCCAGCAATAGCAATGCCGGCATCCAG
GTGATTGCTTAGAAATTGCAAGGCGCGGCATGTAGAACGAGGGAAAGGTA
GGGAGGGGGGGAAGAATGGGATAAAGTAGTATGGCTAGCCGGCGAGAGAT
GCATGTTGAGATTGACGGAGGCCTCAGTCTCGATTCCAAGAAAATGAAGG
CAGAGGGGTAAGATTCAGATTGTATGTTGCATGTTCACACGCCTACGGTA
TGACGAGAGGAAGTCAAGAAGAGCCAAAAGCAATGTGACAATGCCGAGTA
TCACTCTGTGGCCATGGGTCAGGAAGGTACCTGTCCGTTAATGAATGTCA
ACAATCGAAAGTATGAAAGGGTAGTGGCATGCATGAAACCGTG

protein sequence of NO16G00630.1

>NO16G00630.1-protein ID=NO16G00630.1-protein|Name=NO16G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSNSSTPLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKRNEFMT
EPEFCDEFLQVDLRELDNCIKASKGCNHVYNLAADMGGMGFIESNQSVLM
WNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEADAW
PAKPQEVYGLEKLYHEEMALAYSRDFPMVSRIARFHNVYGPFGTWKGGRE
KAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSETAVK
PLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQGVRGRNSDNTLIRE
ELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFDYSSSKVVVQTTDSL
DALGGKEKGLVSSIPESDLASNSNAGIQVIA*

Synonyms

Publications